Hennig86
Hennig86
简介
Hennig86 于 1988 由 James S. Farris 编写并发布,是第一个能在 MS-DOS IBM-PC 及其兼容性机器上运行良好的简约法软件。最初售价 50 美元,目前已经不再分发并且已经被 TNT 取代,但是他的文件风格以及部分命令已经被众多软件吸取。
注意!Hennig86 不是 TNT 的前身!
分析基础
你需要安装 DOSBox 软件,并且具备很少的 DOS 命令基础,比如 MOUNT
TYPE
等。
文件基础
Hennig86 自带示例文件如下,跟 TNT 完全兼容。
xread 'SALA -- BOLICK ADV. CLAD. 1:115-125 SALMEA (COMPOSITAE: HELIANTHEAE)' 24 11 ANCT 000000000000000000000000 SCAN 000000100001210000000000 ORTH 000000100001101000000000 OLIG 100000100002010111000000 PALM 000000100002000110100000 PETR 001100100000000000011000 CALE 100021011110000000000000 GLAB 000200111100000000000001 MONT 321010111100000000000000 INSI 220000011110000000000110 PAUC 210010011110000000000101 ; proc / ;
分析流程
基础 log
display*
让也在终端显示。
log hennig.log; display*;
基础 help
quote This function help send comments to log file; quote Here are functions; assist;
打开文件
view
查看文件。
quote Open data file and view it; view CZ.SS; procedure CZ.SS;
设置外群
/num
设置多个外群中相对外的 prime outgroup
。0.2
中的 .
代表范围
quote Set outgroups and prime outgroup (0-2 are outgroups and 0 is prime outgroup); outgroup = 0.2 /0; outgroup;
查看 character weighting
ckeep
和 cget
用于快速保存、选择某一套 character weighting 以及 additive (ccode+.;
) 和 non-additive (ccode-.;
)。 ccode;
查看状态。
quote Check character weighting realted settings and store them in internal file 1; ccode-.; ckeep 1; ccode; quote Set them as additive character and save as internal file 2; ccode+.; ccode; ckeep 2; quote Check eveything as additive, now run cget to obtain previous config; cget 1; ccode;
基础搜索树
hennig
bb
都是对单个树计算, keep
对树进行划归组保存为内部树文件。
quote Start an example on how to search tree; hennig; bb; quote Here to disable ascii and have a look; txascii-; tplot; tlist; quote Store it into internal tree file 0; keep 1;
查看树的信息
xsteps
主要用于查看树的信息。
quote Output Tree Length based on tree number, same with xsteps; xsteps l; quote Output characters' steps RI CI; xsteps c; quote Display max/min steps for per character; steps;
进阶搜索树
hennig
bb
的 m
前缀是多个树的意思,*
后缀是指树的数量要不要做限制。这个搜索保存到内部树文件 2。watch
查看每个命令耗费的时间。
quote Check current memory; bytes; quote Start watch time; watch; quote Start search heavily and swap trees; mhennig*; bb*; quote Store them into internal tree file 1; keep 2;
基础合意树
合意树保存到内部树文件 3。
quote Generate strict consensus tree, all trees will be removed from memory; nelsen; quote Store it into internal tree file 3; keep 3;
successive weighting
ccode
weighting 搜索保存到内部树文件 4。
quote Successive Weighting can be enabled; xsteps w; ccode; mhennig*; bb*; quote Store them into internal tree file 4; keep 4;
合意树保存到内部树文件 5。
quote Generate strict consensus tree, all trees will be removed from memory; nelsen; quote Store it into internal tree file 5; keep 5;
穷举法
ie*;
使用穷举法,保存到内部树文件 6。
quote Search all the trees; ie*; quote Store them into internal tree file 6; keep 6;
合意树保存到内部树文件 7。
quote Generate strict consensus tree, all trees will be removed from memory; nelsen; quote Store it into internal tree file 7; keep 7;
时间测试
watch-;
停止测试时间
quote Stop watch time; watch-;
查看树
get
切换不同的内部树文件, tlist
查看文件。
quote Test internal tree files via get; files; get 3; tlist; get 5; tlist; tsave con.tre;
编辑内部树文件
erase
删除内部树文件, files
查看内部树文件有哪些。
quote Delete internal tree file; erase 1; files;
退出
log/;
停止记录,yama
退出 Hennig86。
quote Stop log and quit; log/; yama;
查看编辑树
xx
查看树。
xx \ / ;